PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021525
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 226aa    MW: 24853.5 Da    PI: 4.7409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021525genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1786136356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g+
  Cla021525  86 YRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAAFSMRGA 136
                9*******.**********422...25*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-2985143IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2185144IPR016177DNA-binding domain
PROSITE profilePS5103223.07785143IPR001471AP2/ERF domain
SMARTSM003806.0E-3485149IPR001471AP2/ERF domain
PRINTSPR003674.6E-108697IPR001471AP2/ERF domain
CDDcd000188.89E-1986145No hitNo description
PfamPF008474.8E-1386135IPR001471AP2/ERF domain
PRINTSPR003674.6E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDYSGFFSPV SDFSSESSFG SPESSFMNLD HNFLPFNEND SEEMLLYGLI SEGTQDSSDN  60
SIGTARVKEE EVDSIGEESP KKERAYRGVR RRPWGKFAAE IRDSTRHGIR VWLGTFDSAE  120
AAALAYDQAA FSMRGAAAIL NFPVDRVRES LKEMNCSGGG SDSIAEDGGS PVVALKRKHS  180
IRRKAISKKS KERDVRIQNV VVLEDLGAEY LEELLGTSQS GSPCSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-2682144264ATERF1
2gcc_A2e-2682144264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438534.11e-135PREDICTED: ethylene-responsive transcription factor 1B
SwissprotQ8LDC84e-75ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0A0L7501e-132A0A0A0L750_CUCSA; Ethylene-responsive transcription factor 1B
STRINGPOPTR_0010s08300.13e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-55ethylene response factor 1